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1

An introduction to Docker for reproducible research

Boettiger, Carl

Journal:

ACM SIGOPS Operating Systems Review

Year:

2015

Language:

english

File:

PDF, 170 KB

english, 2015

2

RNeXML: a package for reading and writing richly annotated phylogenetic, character and trait data in r

Boettiger, Carl, Chamberlain, Scott, Vos, Rutger, Lapp, Hilmar, Fitzjohn, Richard

Journal:

Methods in Ecology and Evolution

Year:

2016

Language:

english

File:

PDF, 153 KB

english, 2016

3

Packaging data analytical work reproducibly using R (and friends)

Marwick, Ben, Boettiger, Carl, Mullen, Lincoln

Journal:

The American Statistician

Year:

2017

Language:

english

File:

PDF, 543 KB

english, 2017

4

Rebuilding global fisheries under uncertainty

Memarzadeh, Milad, Britten, Gregory L., Worm, Boris, Boettiger, Carl

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.02 MB

english, 2019

5

Fluctuation domains in adaptive evolution

Carl Boettiger, Jonathan Dushoff, Joshua S. Weitz

Journal:

Theoretical Population Biology

Year:

2010

Language:

english

File:

PDF, 2.84 MB

english, 2010

6

IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS

Carl Boettiger, Graham Coop, Peter Ralph

Journal:

Year:

2012

Language:

english

File:

PDF, 849 KB

english, 2012

7

MODELING STABILIZING SELECTION: EXPANDING THE ORNSTEIN–UHLENBECK MODEL OF ADAPTIVE EVOLUTION

Jeremy M. Beaulieu, Dwueng-Chwuan Jhwueng, Carl Boettiger, Brian C. O’Meara

Journal:

Year:

2012

Language:

english

File:

PDF, 879 KB

english, 2012

8

Treebase: an R package for discovery, access and manipulation of online phylogenies

Boettiger, Carl, Temple Lang, Duncan, Harmon, Luke

Journal:

Methods in Ecology and Evolution

Year:

2012

Language:

english

File:

PDF, 578 KB

english, 2012

9

IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS

Boettiger, Carl, Coop, Graham, Ralph, Peter

Journal:

Year:

2012

Language:

english

File:

PDF, 17.04 MB

english, 2012

10

Early warning signals: the charted and uncharted territories

Carl Boettiger, Noam Ross, Alan Hastings

Journal:

Theoretical Ecology

Year:

2013

Language:

english

File:

PDF, 628 KB

english, 2013

11

ASCARIS LUMBRICOIDES FOUND IN THE CAVITY OF THE HUMAN HEART

Boettiger, Carl

Journal:

JAMA The Journal of the American Medical Association

Year:

1929

Language:

english

File:

PDF, 192 KB

english, 1929

12

PRIMARY SUPPURATION OF LIVER DUE TO FRIEDLAENDER'S BACILLUS

BOETTIGER, CARL, WEINSTEIN, MANDEL, WERNE, JACOB

Journal:

JAMA The Journal of the American Medical Association

Year:

1940

Language:

english

File:

PDF, 10.01 MB

english, 1940

13

MODELING STABILIZING SELECTION: EXPANDING THE ORNSTEIN—UHLENBECK MODEL OF ADAPTIVE EVOLUTION

Jeremy M. Beaulieu, Dwueng-Chwuan Jhwueng, Carl Boettiger, Brian C. O'Meara and L. Kubatko

Journal:

Year:

2012

Language:

english

File:

PDF, 3.72 MB

english, 2012

14

IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS

Carl Boettiger, Graham Coop, Peter Ralph and P. Lindenfors

Journal:

Year:

2012

Language:

english

File:

PDF, 3.25 MB

english, 2012

15

The Shape, Multiplicity, and Evolution of Superclusters in ΛCDM Cosmology

Wray, James J., Bahcall, Neta A., Bode, Paul, Boettiger, Carl, Hopkins, Philip F.

Journal:

The Astrophysical Journal

Year:

2006

Language:

english

File:

PDF, 503 KB

english, 2006

16

Optimal management of a stochastically varying population when policy adjustment is costly

Boettiger, Carl, Bode, Michael, Sanchirico, James N., LaRiviere, Jacob, Hastings, Alan, Armsworth, Paul R.

Journal:

Ecological Applications

Year:

2016

Language:

english

File:

PDF, 378 KB

english, 2016

17

Early warning signals and the prosecutor's fallacy

Carl Boettiger and Alan Hastings

Journal:

Proceedings Biological Sciences

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

18

After the games are over: life-history trade-offs drive dispersal attenuation following range expansion

Perkins, T. Alex, Boettiger, Carl, Phillips, Benjamin L.

Journal:

Ecology and Evolution

Year:

2016

Language:

english

File:

PDF, 541 KB

english, 2016

19

Skills and Knowledge for Data-Intensive Environmental Research

Hampton, Stephanie E., Jones, Matthew B., Wasser, Leah A., Schildhauer, Mark P., Supp, Sarah R., Brun, Julien, Hernandez, Rebecca R., Boettiger, Carl, Collins, Scott L., Gross, Louis J., Fernández, De

Journal:

Year:

2017

Language:

english

File:

PDF, 873 KB

english, 2017

20

Making ecological models adequate

Getz, Wayne M., Marshall, Charles R., Carlson, Colin J., Giuggioli, Luca, Ryan, Sadie J., Romañach, Stephanie S., Boettiger, Carl, Chamberlain, Samuel D., Larsen, Laurel, D’Odorico, Paolo, O’Sullivan,

Journal:

Ecology Letters

Year:

2017

Language:

english

File:

PDF, 892 KB

english, 2017

21

From noise to knowledge: how randomness generates novel phenomena and reveals information

Boettiger, Carl, Coulson, Tim

Journal:

Ecology Letters

Year:

2018

Language:

english

File:

PDF, 663 KB

english, 2018

22

Adaptive management of ecological systems under partial observability

Memarzadeh, Milad, Boettiger, Carl

Journal:

Biological Conservation

Year:

2018

Language:

english

File:

PDF, 837 KB

english, 2018

23

A Community of Practice Around Peer-review for Long-term Research Software Sustainability

Ram, Karthik, Boettiger, Carl, Chamberlain, Scott, Ross, Noam, Salmon, Maelle, Butland, Stefanie

Journal:

Computing in Science & Engineering

Year:

2018

Language:

english

File:

PDF, 2.12 MB

english, 2018

24

Bifurcation or state tipping: assessing transition type in a model trophic cascade

Boettiger, Carl, Batt, Ryan

Journal:

Journal of Mathematical Biology

Year:

2019

Language:

english

File:

PDF, 790 KB

english, 2019

25

Bifurcation or state tipping: assessing transition type in a model trophic cascade

Boettiger, Carl, Batt, Ryan

Journal:

Journal of Mathematical Biology

Year:

2019

File:

PDF, 790 KB

2019

26

My experiment with open science: Why the benefits of sharing go beyond source code

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 2.55 MB

english, 2010

27

Robust information from phylogenetic trees?

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 1.16 MB

english, 2010

28

A new phylogenetic comparative method: detecting niches and transitions with continuous characters

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 1.52 MB

english, 2010

29

Reading the Secrets of Biological Fluctuations

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 520 KB

english, 2010

30

A general model of continuous character evolution

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 2.67 MB

english, 2011

31

Using TreeBASE from R

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2012

Language:

english

File:

PDF, 531 KB

english, 2012

32

The Evolutionary Seesaw: Origins of biodiversity?

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2012

Language:

english

File:

PDF, 2.91 MB

english, 2012

33

Integrating Open Lab Notebooks with Online Databases

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2012

File:

PDF, 377 KB

2012

34

Limits to the detection of early warning signals of population collapse

Boettiger, Carl, Hastings, Alan

Journal:

Bioentrepreneur

Year:

2012

Language:

english

File:

PDF, 4.58 MB

english, 2012

35

Robust information from phylogenetic trees?

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 1.16 MB

2010

36

Reading the Secrets of Biological Fluctuations

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 520 KB

2010

37

A new phylogenetic comparative method: detecting niches and transitions with continuous characters

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 1.52 MB

2010

38

My experiment with open science: Why the benefits of sharing go beyond source code

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 2.55 MB

2010

39

Using TreeBASE from R

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2012

File:

PDF, 531 KB

2012

40

A general model of continuous character evolution

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 2.67 MB

2011

41

The Evolutionary Seesaw: Origins of biodiversity?

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2012

File:

PDF, 2.91 MB

2012

42

Integrating Open Lab Notebooks with Online Databases

Boettiger, Carl

Journal:

Bioentrepreneur

Year:

2012

File:

PDF, 377 KB

2012

43

Limits to the detection of early warning signals of population collapse

Boettiger, Carl, Hastings, Alan

Journal:

Bioentrepreneur

Year:

2012

File:

PDF, 4.58 MB

2012

44

Neural hierarchical models of ecological populations

Joseph, Maxwell B., Boettiger, Carl

Journal:

Ecology Letters

Year:

2020

Language:

english

File:

PDF, 11.96 MB

english, 2020

45

taxadb: A HighâPerformance Local Taxonomic Database Interface

Norman, Kari E A, Chamberlain, Scott, Boettiger, Carl

Journal:

Methods in Ecology and Evolution

Year:

2020

File:

PDF, 4.65 MB

2020

46

Ecological management of stochastic systems with long transients

Boettiger, Carl

Journal:

Theoretical Ecology

Year:

2020

File:

PDF, 7.07 MB

2020

47

Structural forecasting of species persistence under changing environments

Saavedra, Serguei, Medeiros, Lucas P., AlAdwani, Mohammad, Boettiger, Carl

Journal:

Ecology Letters

Year:

2020

File:

PDF, 1.61 MB

2020

48

A Shiny R app to solve the problem of when to stop managing or surveying species under imperfect detection

Pascal, Luz, Memarzadeh, Milad, Boettiger, Carl, Lloyd, Hannah, ChadÃ¨s, Iadine

Journal:

Methods in Ecology and Evolution

Year:

2020

File:

PDF, 7.70 MB

2020

49

Clockwise and counterclockwise hysteresis characterize state changes in the same aquatic ecosystem

Northrop, Amanda C., Avalone, Vanessa, Ellison, Aaron M., Ballif, Bryan A., Gotelli, Nicholas J., Boettiger, Carl

Journal:

Ecology Letters

Year:

2020

File:

PDF, 683 KB

2020